Plant MITE

SE2210101

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4824
Zea mays
SE2210101
Tc1/Mariner
St6
chr5:197601289-197601527
TA
TACTCCCTCCGTCCCAAATTATAATCCATTTGACTTTTTTGTGTCATGTTTGACCGGCTCGTCCTATTCAAATTTTCTGTGA

Secondary structure and sequence

TSD TIR

5'

3'

            C C  A       C A              G CAT     A          C    ---C       --------------------      ---AAAAA    AAATTCAAAGCCATA
TACTCCCTCCGT C AA TTATAAT C TTTGACTTTTTTGT T   GTTTG CCGGCTCGTC TATT    AAATTTT                    CTGTGA        TGAA               
|||||||||||| | || ||||||| | |||||||||||||| |   ||||| |||||||||| ||||    |||||||                    ||||||        ||||               T
ATGAGGGAGGTA G TT AATATTA G AAACTGAAAAAATG G   CAAAC GGCCGAGCAG ATAA    TTTAAAG                    GACACT        TCGT               
            A A  A       A C              G ATT     A          A    TTTT       TATTAATAACAATTAAAAAC      ATAACAAA    ATATTATATGAAATT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2210101

TACTCCCTCCGTCCCAAATTATAATCCATTTGACTTTTTTGTGTCATGTTTGACCGGCTCGTCCTATTCAAATTTTCTGTGAAAAAATGAAAAATTCAAAGCCATATTTAAAGTATATTATATGCTAAACAATATCACAGCAAAAATTAACAATAATTATGAAATTTTTTTAATAAGACGAGCCGGACAAACTTAGGGTAAAAAAGTCAAACGAATTATAAATTAGAATGGAGGGAGTA

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