Plant MITE

SE2210105

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4828
Zea mays
SE2210105
Tc1/Mariner
St7
chr5:210745233-210745471
TA
TACTCCCTCCGTTCATAAATATATGACACCGTTGACTTTTTACAAAAAAAATTGACCACTCGTCTTATTCAAAAAAAATAATGAGTTA

Secondary structure and sequence

TSD TIR

5'

3'

    C                                    A A    AAA      A          -------------       ----    AA       ----TTTT       TT     TTG
TACT CCTCCGTTCATAAATATATGACACCGTTGACTTTTT C AAAA   TTGACC CTCGTCTTAT             TCAAAAA    AAAT  TGAGTTA        TTATTTT  GTGAT   
|||| |||||||||||||||||||||||||||||||||||| | ||||   |||||| ||||||||||             |||||||    ||||  |||||||        |||||||  |||||   T
ATGA GGAGGCAAGTGTTTATATACTGTGGTAACTGAAAAA G TTTT   AACTGG GAGCAGAATA             AGTTTTT    TTTA  ATTCAAT        GATGGAA  CACTA   
    T                                    A C    -AA      C          AATTTTATAAATA       ACAT    AA       TCGTGTTT       TT     TTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2210105

TACTCCCTCCGTTCATAAATATATGACACCGTTGACTTTTTACAAAAAAAATTGACCACTCGTCTTATTCAAAAAAAATAATGAGTTATTTTTTATTTTTTGTGATTTGTTTTATCACTTAAGGTAGTTTGTGCTTAACTTAAAATTTTACATTTTTGAATAAATATTTTAAATAAGACGAGCGGTCAAAATTTTCGAAAAAAGTCAATGGTGTCATATATTTGTGAACGGAGGTAGTA

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