SE2210112

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4835
  • Zea mays
  • SE2210112
  • Tc1/Mariner
  • St6
  • chr5:13310815-13311052
  • TA
  • TACTCCCTCCGTTCCAATTTATAATTCATTTGACTTTTTT

Secondary structure and sequence

TSD    TIR
5'



3' 
         C       T         A     C      -GCCC            A     C              ---------    ATTATTATGAATTTGTACTGTGGTATTGTTTAG
TACTCCCTC GTTCCAA TTATAATTC TTTGA TTTTTT     TAAGTTTGACCG CTCGT TTATTAAAAAAAAT         CACA                                 
||||||||| ||||||| ||||||||| ||||| ||||||     |||||||||||| ||||| ||||||||||||||         ||||                                  
ATGAGGGAG CAGGGTT AATATTAAG AAACT AAAAAA     GTTCAAACTGGC GAGCA AATAATTTTTTTTA         AACT                                 
         A       T         C     T      ATCTA            C     A              ACGCTTTTT    TTTTAGTTTCGATTTTAATGTCATATAATATAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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