Plant MITE

SE2230114

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4837
Zea mays
SE2230114
hAT
Hat21
chr3:41628057-41628618
AGCCTAGT
CTAGTTAGGGATGAAAACGG

Secondary structure and sequence

TSD TIR

5'

3'

AGC    --             C  -   AAAA   TCGAAAAACAGCTAAATTGTTTTTGTTTTCATATTTTTTGGTCAGGACGAAAACGAAAACCAACGGTCGAAATACGGGATCGGAATTGTCGGTTATTCGAAAACGATCAAAAACGATAAACTATAGTCGGAAAGATAACTATTTTGTAGTTTTATCAAAAACATAATAAAGTGATGTATTGCCTAATTTTTAAGATTTAGAAATACACAAACAACTCTTTTTCATCATCCATATTAGTTAGAGTAATTA
   CTAG  TTAGGGATGAAAA GG CCG    CGA                                                                                                                                                                                                                                                         
   ||||  ||||||||||||| || |||    |||                                                                                                                                                                                                                                                         T
   GATC  AATCCCTACTTTT CC TGC    CCT                                                                                                                                                                                                                                                         
  T    CG             A  C   ----   TTAAGGGCATAGCAGGGCAAAGCTTATGACAAAAAAGGGCTAGCAAAAGCTTAACAAGTCCTTGGCTAATCTTTGTCACGCTTTTGCTAAATTGATCAAAAAGCTAGCAAAAGCATAAAAAGCAAAGGCTCAGTACGATTATGGTAAAAGATGGCAAAATATATTATACTCTATATAGATCGTATATTAAATAAATTCAATATCTGAAAACAACACAAGTTCACTTACTTATTCGCTTTTCGTTTACAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2230114

AGCCTAGTTAGGGATGAAAACGGCCGAAAACGATCGAAAAACAGCTAAATTGTTTTTGTTTTCATATTTTTTGGTCAGGACGAAAACGAAAACCAACGGTCGAAATACGGGATCGGAATTGTCGGTTATTCGAAAACGATCAAAAACGATAAACTATAGTCGGAAAGATAACTATTTTGTAGTTTTATCAAAAACATAATAAAGTGATGTATTGCCTAATTTTTAAGATTTAGAAATACACAAACAACTCTTTTTCATCATCCATATTAGTTAGAGTAATTATAACATTTGCTTTTCGCTTATTCATTCACTTGAACACAACAAAAGTCTATAACTTAAATAAATTATATGCTAGATATATCTCATATTATATAAAACGGTAGAAAATGGTATTAGCATGACTCGGAAACGAAAAATACGAAAACGATCGAAAAACTAGTTAAATCGTTTTCGCACTGTTTCTAATCGGTTCCTGAACAATTCGAAAACGATCGGGAAAAAACAGTATTCGAAACGGGACGATACGGGAATTTCCCGTCCCATTTTCATCCCTAAGCCTAGT

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