Plant MITE

SE2210119

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4842
Zea mays
SE2210119
Tc1/Mariner
St9
chr5:203546521-203546696
TA
TACTCCCTCCGTCTCAGGATATAAGGCGTAACCACTTTTTATTC

Secondary structure and sequence

TSD TIR

5'

3'

                 GA                    TA   TTGTC   CAATATA   C    -------TC         A   -    AT
TACTCCCTCCGTCTCAG  TATAAGGCGTAACCACTTTT  TTC     CCA       AGG GTGC         TCTCTATGC TAC GTAT  
|||||||||||||||||  ||||||||||||||||||||  |||     |||       ||| ||||         ||||||||| ||| ||||   
ATGAGGGAGGCAGGGTC  ATATTCCGCATTGGTGGAGA  AAG     GGT       TCT TACG         AGAGATATG GTG CGTA  
                 AT                    CA   TTTCT   -------   T    TAAATTAAC         -   A    GC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2210119

TACTCCCTCCGTCTCAGGATATAAGGCGTAACCACTTTTTATTCTTGTCCCACAATATAAGGCGTGCTCTCTCTATGCATACGTATATCGATGCAGTGGTATAGAGACAATTAAATGCATTTCTTGGTCTTTGAAACAGAGGTGGTTACGCCTTATATACTGGGACGGAGGGAGTA

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