SE2210120

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4843
  • Zea mays
  • SE2210120
  • Tc1/Mariner
  • St7
  • chr5:183325353-183325592
  • TA
  • TACTACCTCCGTTCTTAAATATATGACGCTGTTGACTTTTTGTTTGAAAACTTTGACTACTCGTCTTATTCAGAAAAAAATGTGAA

Secondary structure and sequence

TSD    TIR
5'



3' 
    A                              C     GTT                               ---------  A        TTATC    ACTTT         TGTTTT   ACT
TACT CCTCCGTTCTTAAATATATGACGCTGTTGA TTTTT   TGAAAACTTTGACTACTCGTCTTATTCAGAA         AA AATGTGAA     ATTT     GTTATGATT      ATC   
|||| |||||||||||||||||||||||||||||| |||||   |||||||||||||||||||||||||||||||         || ||||||||     ||||     |||||||||      |||    
ATGA GGAGGCAAGAATTTATATACTGCGGTAACT AAAAA   ACTTTTGAAACTGGTGAGCAGAATAAGTTTT         TT TTACATTT     TAAA     CAGTACTAG      TGG   
    G                              T     ---                               ATAAATAAG  C        -----    --GCT         -TTTGT   AGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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