SE2230122

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4845
  • Zea mays
  • SE2230122
  • hAT
  • Hat23
  • chr5:197514419-197514879
  • GGGGCAGC
  • GCAGCTAGAGATGTCCAAATGGGCCGCCCGACCCGGCACGGCCCGGGCCCGGTGAAGTCCGGCCCGTTTTGG

Secondary structure and sequence

TSD    TIR
5'



3'
GGG  AG   G          -----   -    G C   -         --     -------        -GA        C  T     -------      -----   - CC    A -----    A AAAAC  -       -  - TCTA    CGC  GCTCAATTTTCTGTCCGAGCCCGGCCCGCAGCGGGCCTAAACGGGCCGGGCCGGCCCGTTTAGCACGAAAAAACGGGCCGAATAACGGG
   GC  CTA AGATGTCCAA     ATG GGCC C CGA CCCGGCACG  GCCCG       GGCCCGGT   AGTCCGGC CG TTTGG       GCCCGG     CTC G  AGGC C     CGTT G     CG GGCCGGG CC G    GGCA   GA                                                                                         
   ||  ||| ||||||||||     ||| |||| | ||| |||||||||  |||||       ||||||||   |||||||| || |||||       ||||||     ||| |  |||| |     |||| |     || ||||||| || |    ||||   ||                                                                                         C
   CG  GAT TCTACAGGTT     TGC CCGG G GCT GGGCCGTGC  CGGGC       CCGGGCCA   TCGGGCCG GC AGGCC       GCCCGA     GCC G  GCCG T     TTCG C     CC GTCCGAG CT T    TTTG   TC                                                                                         
CGA  GG   A          ATTCG   T    - T   C         TT     AATAAAT        GGC        T  C     AAGATAC      GTCCA   G --    - GCTTA    - -----  G       C  G --TC    --A  CGTGCCACCCGATCGGGCCGTGCCGGGCAAATGGAGATTCGGGCAATTAGGGCGAAAAAATGTGATTTTGCACGAATGGCCGGGCGTAT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End