SE2250124

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4847
  • Zea mays
  • SE2250124
  • PIF/harbinger
  • To10
  • chr5:12556906-12557261
  • TTA
  • AGGCCCCGCTTGGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   C    C     TT   T  CTAAAGATTAGTCCCTTCATTTTAGTCTCATTTAGTCCCTAAATTGCCAAACGATGGGACTAAAACAGGGACTAAACTGTTTTAGTCTCTAGTTTCTCAAGAGGTGACTAAAAGGGACTAAACCATATAAATTCCACTTTTTACCCCTCCTTTAT
  AGG CCCG TTGGT  GAG GA                                                                                                                                                           
  ||| |||| |||||  ||| ||                                                                                                                                                           T
  TCC GGGC AACCA  AGG AA                                                                                                                                                           
AT   C    A     --   -  ATCAAGTTCCTAATTTCAAATCAATCTTCTGATTTCAAATCAGGGATAGGATAAACCAAGATTTCTGATTTTCATAAGTTTTGTATGATGTACTTAGTATTCTCTTGGTTTTATGGGGAATTGTAAGAAGGAAGAGGGCAGTAATCACGTTGGCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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