Plant MITE

SE2250129

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4852
Zea mays
SE2250129
PIF/harbinger
To52
chr4:174716747-174717314
TTA
AGGGCCCGTTTGGCACAGCTCCAGCTCCTGATTCTAAGCGAGGATC

Secondary structure and sequence

TSD TIR

5'

3'

TT               C              A    -A   -GA                 GCCAAACGGGTATTTTTTTAAACTGATTCTTGTGTGCAGCCGAAAGATCGGGAGTCGTTTTTGTGAAGAAAGGTGGGATCTAAAAAAACCTGCTCCACCCTCCCTTAAAACAGCTCCTCAACCAACCAAATATGGACCTCCCCTTAAAGTTTGATCGAAATTACCCGCAATTGCCATTGGACAAAAACATAACGAGCCAATTTATGGATTAAACATTTGAGAC
  AGGGCCCGTTTGGCA AGCTCCAGCTCCTG TTCT  AGC   GGATCTGGAGGAGCCGT                                                                                                                                                                                                                               
  ||||||||||||||| |||||||||||||| ||||  |||   |||||||||||||||||                                                                                                                                                                                                                                
  TCCCGGGCAAACCGT TCGAGGTTGAGGAC AAGA  TCG   TCTAGGACTAGGAGTAC                                                                                                                                                                                                                               
AT               T              G    AA   AGG                 TCCTCGACTAGGAGGACTAAGAGGATCTTTTAGTCTTAGTAAAAATTTTGGCAAACCGTTCATTTAACTAAGAACAGAAGACTCTCAACCACCAGACACCGCTAACAGACAAAATGGGAAACGTCAAGTTGAAACAATGTTTGGTTATTCATCCTACGTATATGCCTTTTTTTATACTTTGTTATTGTATATTTTATAAAGGTAATATCATCACGTATTTTAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250129

TTAGGGCCCGTTTGGCACAGCTCCAGCTCCTGATTCTAAGCGAGGATCTGGAGGAGCCGTGCCAAACGGGTATTTTTTTAAACTGATTCTTGTGTGCAGCCGAAAGATCGGGAGTCGTTTTTGTGAAGAAAGGTGGGATCTAAAAAAACCTGCTCCACCCTCCCTTAAAACAGCTCCTCAACCAACCAAATATGGACCTCCCCTTAAAGTTTGATCGAAATTACCCGCAATTGCCATTGGACAAAAACATAACGAGCCAATTTATGGATTAAACATTTGAGACCATTTTATGCACTACTATAATGGAAATATTTTATATGTTATTGTTTCATATTTTTTTCCGTATATGCATCCTACTTATTGGTTTGTAACAAAGTTGAACTGCAAAGGGTAAAACAGACAATCGCCACAGACCACCAACTCTCAGAAGACAAGAATCAATTTACTTGCCAAACGGTTTTAAAAATGATTCTGATTTTCTAGGAGAATCAGGAGGATCAGCTCCTCATGAGGATCAGGATCTGGAGCTAAAGAAGCAGGAGTTGGAGCTTTGCCAAACGGGCCCTTA

Copy Cancel