SE2250131

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4854
  • Zea mays
  • SE2250131
  • PIF/harbinger
  • To36
  • chr3:126637336-126637479
  • TTA
  • AGGCTTTGTTTGGTTACTCTAGTATTGACCCCAATCCACATGTGTTGAGGTGGATTAGGTGTAAATTAGTTTAAGTTATACCACAATCCACCTCAATACATGTGTATTAGGGTCAATACTAGAGTATCCAAACTAGGCCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT      T      T                 C   C                    -A       A   G
  AGGCTT GTTTGG TACTCTAGTATTGACCC AAT CACATGTGTTGAGGTGGATT  GGTGTAA TTA 
  |||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||||  ||||||| ||| T
  TCCGGA CAAACC ATGAGATCATAACTGGG TTA GTGTACATAACTCCACCTAA  CCATATT AAT 
AT      T      T                 A   T                    CA       G   T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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