SE2250133

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4856
  • Zea mays
  • SE2250133
  • PIF/harbinger
  • To53
  • chr4:83322313-83322593
  • TTA
  • AGAGCATCTCCAATAGACT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             T     CTTCATTTTTTACTCTCTAT     ---- ATTTATTTACGTTTT -   A -  TTACACTCTATATATATCATCTCAGTCAACAAACTATCTATTTAGTTTGGCTAGTCATGTAGCTAGCCAAATTTAGCTAGTGAGA
  AGAGCATCTCCAA AGACT                    TTGAC    T               T ATA A GA                                                                                     
  ||||||||||||| |||||                    |||||    |               | ||| | ||                                                                                      
  TCTCGTAGAGGTT TCTGA                    CGATT    C               A CGA T CG                                                                                     
AT             C     -------------------T     TATT --------------- A   - T  GTTTAAAACCGATGAGTTATCGTTTTATTTAGAGTTTGTCTGATCGATATACTGAGCGTTCGATAGATTGAGAGATTTAACCGAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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