Plant MITE

SE2220140

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4863
Zea mays
SE2220140
Mutator
M1
chr5:28679963-28680225
TCTAGTCTT
CTAG

Secondary structure and sequence

TSD TIR

5'

3'

   T    TCTT                    C       A               A                             C  C       GTAATCG    TTG     GGC        AAAT    AC
    CTAG    GGCAACGACTAATATGCAAG AATTATT GGTGCAAGCGTGCAA TAGCTCTTTTGGTCCGTTGGATCTAGATC AA CGTATGT       TGGT   TTAGG   TTTTTTAT    CCAC  
    ||||    |||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||| || |||||||       ||||   |||||   ||||||||    ||||  G
    GATC    CCGTTGCTGATTATACGTTC TTAGTAA CCACGTTCGCACGTT GTCGAGAAAACCAGGCAATCTAGATCTAG TT GCATACG       ATCG   AATTT   GGAGGGTG    GGTG  
TTCT    ---T                    A       A               C                             A  T       -ATATAA    -TA     --A        --GT    GA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2220140

TCTAGTCTTGGCAACGACTAATATGCAAGCAATTATTAGGTGCAAGCGTGCAAATAGCTCTTTTGGTCCGTTGGATCTAGATCCAACCGTATGTGTAATCGTGGTTTGTTAGGGGCTTTTTTATAAATCCACACGAGGTGGTGGTGGGAGGATTTAAATGCTAAATATAGCATACGTTTAGATCTAGATCTAACGGACCAAAAGAGCTGCTTGCACGCTTGCACCAAATGATTACTTGCATATTAGTCGTTGCCTCTAGTCTT

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