Plant MITE

SE2250150

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4873
Zea mays
SE2250150
PIF/harbinger
To22
chr6:105088153-105088383
GTA
GTGTGTTTGGTTTG

Secondary structure and sequence

TSD TIR

5'

3'

GTAGA              -   --- AT   - TGATCCATCTTCTTCTCACTCCTCACTTTTTTATTTGGTTTGTGGAATAGAATGGGTTGATCCATCACCACCCCATTCCTCATAA
     GTGTGTTTGGTTTG AGA   A  GAA G                                                                                     
     |||||||||||||| |||   |  ||| |                                                                                      
     CACACAAACCAAAC CCT   T  GAG T                                                                                     
ATGAC              A   CAG --   A ACGAAGTACTCCACTATGTAATATTCAAGTAAGGTAGTTAAAACCACTTTAGTTAGGTGAGGAGTACATATATGATTAATAATCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250150

GTAGAGTGTGTTTGGTTTGAGAAATGAAGTGATCCATCTTCTTCTCACTCCTCACTTTTTTATTTGGTTTGTGGAATAGAATGGGTTGATCCATCACCACCCCATTCCTCATAAGCTAATAATTAGTATATACATGAGGAGTGGATTGATTTCACCAAAATTGATGGAATGAACTTATAATGTATCACCTCATGAAGCATAGAGTGACTCCACAAACCAAACACACCAGTA

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