SE2250155

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4878
  • Zea mays
  • SE2250155
  • PIF/harbinger
  • To59
  • chr7:112419667-112420105
  • TTA
  • AGGGCCTGTTTGAGAGAGCTTTGCTTCAAAAACTTCAGCTTTGGTTT

Secondary structure and sequence

TSD    TIR
5'



3'
TT   G        A                A  C     C   G    -TCCAG     -  ATA      C      AAATTGTTAAGGTGAGT    G    G        --------GTA     ACTCCAACTTCTATAGTACAATTGATTTGTGTGTGTTTCCTTGATTACCCTTGATGATTAGTGGGTTGTCGCCAGAGAGAACGGAAGTTGTATGTTGCGTAACCA
  AGG CCTGTTTG GAGAGCTTTGCTTCAA AA TTCAG TTT GTTT      TTTCA CT   AAACAG TCCAGC                 TCCA GAGC TTTGGTTT           TATGG                                                                                                         
  ||| |||||||| |||||||||||||||| || ||||| ||| ||||      ||||| ||   |||||| ||||||                 |||| |||| ||||||||           |||||                                                                                                          
  TCC GGACAAAC CTCTCGAAGTGAAGTT TT AAGTT AAA CAAA      GAAGT GG   TTTGTC AGGTCG                 AGGT CTCG AAATCAAA           CTTTG                                                                                                         
AT   G        C                C  A     -   G    CTTGAA     T  --G      C      -----------------    G    -        ATTTTTTTTAG     ATCTCCGGGCAAAGTACTTTAAGTACTTCGAGGAATCTCCCACGAAGTTTTTGTGACAAAAATATAGAGGAGTACTTCGATATACTTTTAATGGGTGGTACGGTG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End