SE2230157

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4880
  • Zea mays
  • SE2230157
  • hAT
  • Hat27
  • chr5:157873943-157874126
  • GTATGAGT
  • TCATAGTCACA

Secondary structure and sequence

TSD    TIR
5'



3' 
GTATGAG           ATGTTTTCAGGA    AGG   GAGGGACGGGGTTGAGGAACGTGGTACGCTAACTGTGAGAGGTTTTTACATGGTGGTAA
       TCATAGTCACA            CGAT   GTC                                                           
       |||||||||||            ||||   |||                                                           A
       GGTATCAGTGT            TCTT   TGC                                                           
TGAGTAT           ------------    ---   CCATGCCACCATCGCTGGGAGCTAGGCCTTTGCACTGGGTCTTTGCGTCCCAGTAAAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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