SE2220160

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4883
  • Zea mays
  • SE2220160
  • Mutator
  • M16
  • chr3:2681117-2681380
  • TATAGAAAG
  • GGGGATCGTATCCAGTGCACAAGGGCCACGCCGTGCACAAATGCACAAAACGAAATCTGGCCGTCCATTTTCCATCCAACGACATGACG

Secondary structure and sequence

TSD    TIR
5'



3' 
TATAGAAA                                                                  A              A A  A  -------  G   - GGGTTTTTCACAAAACAGACTCGGC
        GGGGATCGTATCCAGTGCACAAGGGCCACGCCGTGCACAAATGCACAAAACGAAATCTGGCCGTCC TTTTCCATCCAACG C TG CG       GC CGG G                         
        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | || ||       || ||| |                          
        TCCCTAGCATAGGTCACGTGTTCCCGGTGCGGCACGTGTTTACGTGTTTTGCTTTAGACCGGCAGG AGAGGGTAGGTTGC G GC GC       CG TCT C                         
GAAAGATA                                                                  C              C -  A  ATTTATA  -   A TTGGGAGGGCGTCGGAGGCATCGAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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