SE2210165

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4888
  • Zea mays
  • SE2210165
  • Tc1/Mariner
  • St13
  • chr9:112331716-112332050
  • TA
  • TACTCCCTCCAGTGCAGTAAAGGTAGTCGTTTAGGACATGATTGTGCATACCAAGGAGTGAT

Secondary structure and sequence

TSD    TIR
5'



3'
          A            T        -----AG   A   T        CC       G  TAATTATCATA      ---------TCCC    T       T   --A  G   TAT         AACGTCACTAAA     CA G TTGATTGGTTGCTGCAGCAACTCCAAG
TACTCCCTCC GTGCAGTAAAGG AGTCGTTT       GAC TGA TGTGCATA  AAGGAGT AT           GAGTTT             TGTT GCCCCTA TAA   TA GGA   GGGTGCATT            AGAAT  G C                           
|||||||||| |||||||||||| ||||||||       ||| ||| ||||||||  ||||||| ||           ||||||             |||| ||||||| |||   || |||   |||||||||            |||||  | |                            
ATGAGGGAGG CACGTCATTTTC TCAGTAGG       CTG GCT GCACGTGT  TTCTTCA TA           CTCAGA             ACAA CGGGGAT ATT   GT TTT   TCTACGTAA            TCTCC  A G                           
          C            T        ACGCGCA   -   C        TT       G  --TCGCGCACA      TCCTAAACCTGCA    -       C   AAC  G   TTT         ----------AT     TT - CTTGAACTCTGGAGGTCAGATCTTACG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End