SE2210175

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4898
  • Zea mays
  • SE2210175
  • Tc1/Mariner
  • St9
  • chr3:5290194-5290369
  • TA
  • TACTCCCTCCGTCCCAGGATATAAGGCGTAACCACTTTTTATTC

Secondary structure and sequence

TSD    TIR
5'



3'
                 GA                    TA   TTGTC   CAATATA   C    -------TC        TA   -    AT
TACTCCCTCCGTCCCAG  TATAAGGCGTAACCACTTTT  TTC     CCA       AGG GTGC         TCTCTATG  TAC GTAT  
|||||||||||||||||  ||||||||||||||||||||  |||     |||       ||| ||||         ||||||||  ||| ||||   
ATGAGGGAGGCAGGGTC  ATATTCCGCATTGGTGGAGA  AAG     GGT       TCT TACG         AGAGATAT  GTG CGTA  
                 AT                    CC   TTTCT   -------   T    TAAATTAAC        -G   A    GC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End