SE2250176

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4899
  • Zea mays
  • SE2250176
  • PIF/harbinger
  • To63
  • chr5:101593834-101594097
  • TAT
  • CAGTTTGTTTGGTTAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAT    T           TGGAATAA    -    G  A   G  GATCCAGCATGGACTCACTCCTTGTAGATTTGGATGGGAGGAATGAGTTAGTCCGCCTGTTTTGCGAGGAATGGGTAGCTTCTAGATTTTAG
   CAGT TGTTTGGTTAG        CCCT GTTC GA CCA GT                                                                                            
   |||| |||||||||||        |||| |||| || ||| ||                                                                                             
   GTCA ACAAACCAATC        TCCG AGCT TA CCA GG                                                                                            
TAT    C           --------    T    -  -   -  CCTTAGTAGGCTTGGATGTAGGCTCGGATTTTATCACAAACCAATGGTAGTGTCTAAGTAGAGTAGGCAGTAGGGGAGTAAGGCTAGATTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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