SE2250178

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4901
  • Zea mays
  • SE2250178
  • PIF/harbinger
  • To64
  • chr7:51799504-51799648
  • TAA
  • GGCTATGTTTGGATACTCTAGTATTCAATCCAATACACATGGGTGAGATGGGATTGAGGTGTAAAT

Secondary structure and sequence

TSD    TIR
5'



3' 
 TAA    A       ATA          CAA         C      -   AT       A         GAG
    GGCT TGTTTGG   CTCTAGTATT   TCCAATACA ATGGGT GAG  GGGATTG GGTGTAAAT   
    |||| |||||||   ||||||||||   ||||||||| |||||| |||  ||||||| |||||||||   T
    CCGA ACAAACC   GAGATCATAA   GGGTTATGT TACTCA CTC  CCCTAAC CCACATTTA   
AATC    -       CAC          ATG         C      A   -C       C         ATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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