Plant MITE

SE2230180

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4903
Zea mays
SE2230180
hAT
Hat32
chr6:17785837-17786558
ATCAAGGA
TCAAGGATAGGGATGGCAG

Secondary structure and sequence

TSD TIR

5'

3'

A  AAG   -           ----     CG     TGTTCGGGTATAATAATACCCGACCCGAAATTGTACCCGAGACTTCTACAAATATCCATACCCACCAAGCCAATCGGGCGAGAAACTGTACCCGTACCCATGCCCATCGGGTATCCACCGGGTATCGGGTATCCAGTGGATATGTTATTGTAAACTAAATAACATTCGGTCAGTGTTATAATAAATGCATAAAATATTTTAGTTTACATCTAAGCACCAATGCAACACGAGAATGACTATATTTGGCTACACGTCGATACAATATTTCAACTCATAATTATCACATCCAATAAATTTAAATTTGAGTACAGAGAATAAAAGCTTAAT
 TC   GAT AGGGATGGCAG    CGGGT  GGTTT                                                                                                                                                                                                                                                                                                                                       
 ||   ||| |||||||||||    |||||  |||||                                                                                                                                                                                                                                                                                                                                       G
 AG   CTA TCCCTACCGTC    TGGGC  CCCAT                                                                                                                                                                                                                                                                                                                                       
   GAA   A           AACC     -A     ACCTATGGGCGCCCAAAGCATGGGTGGCCTATACCTATGCCCATGTTTTTGAGTGGGCACCCAGGATAGCCCAGCCTATGGGCTTTATGTAGCCCAGCCCATACCCATTTTATGAAATGGGTGCCCATAGGTCACCTATGGGCTTTATAGTTATATGGAGAAATTTATATGATGTAGGTGATTTTTACACGATGTAAGTGATCTTTTTGAGTAAGTGTACACAACAACTAATTACTTATAATTAAACACAACACAATTATCAATGGACATTACATTATCTCTGGTTACTCTGTAATTGTTACAATATTAACAGTTGACAGTACTTGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2230180

ATCAAGGATAGGGATGGCAGCGGGTCGGGTTTTGTTCGGGTATAATAATACCCGACCCGAAATTGTACCCGAGACTTCTACAAATATCCATACCCACCAAGCCAATCGGGCGAGAAACTGTACCCGTACCCATGCCCATCGGGTATCCACCGGGTATCGGGTATCCAGTGGATATGTTATTGTAAACTAAATAACATTCGGTCAGTGTTATAATAAATGCATAAAATATTTTAGTTTACATCTAAGCACCAATGCAACACGAGAATGACTATATTTGGCTACACGTCGATACAATATTTCAACTCATAATTATCACATCCAATAAATTTAAATTTGAGTACAGAGAATAAAAGCTTAATGAGTTCATGACAGTTGACAATTATAACATTGTTAATGTCTCATTGGTCTCTATTACATTACAGGTAACTATTAACACAACACAAATTAATATTCATTAATCAACAACACATGTGAATGAGTTTTTCTAGTGAATGTAGCACATTTTTAGTGGATGTAGTATATTTAAAGAGGTATATTGATATTTCGGGTATCCACTGGATACCCGTGGGTAAAGTATTTTACCCATACCCGACCCGATGTATTTCGGGTATCCGACCCGATAGGACCCACGGGTGAGTTTTTGTACCCGTATCCATATCCGGTGGGTACGAAACCCGCGGGTATCCATACCCACGGGTCCAACTGCCATCCCTAATCAAGGA

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