SE2220187

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4910
  • Zea mays
  • SE2220187
  • Mutator
  • M18
  • chr5:97969380-97969652
  • TTTGATATA
  • AGGCAATGTATCCTGTGTAAAAGGTTCTCCTGTGTAAACATGCTAAAACGGCTTAACAACCTTTAGATCTAGAATCAAAGGCTAATTTTAATCCCACCTAGCCACCGCC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTGATAT                          C                       G             A                                  -------------------------    A  G  ACACGAG
        AGGCAATGTATCCTGTGTAAAAGGTT TCCTGTGTAAACATGCTAAAACG CTTAACAACCTTT GATCTAGAATCAAAGGCTAATTTTAATCCCACCT                         AGCC CC CC       
        |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||                         |||| || ||        
        TCCGTTGCATAGGACACATTTTCCAA AGGATACATTTGTACGATTTTGC GAATTGTTGGAAA CTAGGTCTTAGTTTCCGATTAGAATTAGGGTGGA                         TTGG GG GG       
ATATAGTT                          A                       G             C                                  CTATTAGAACACAAAAAAAGATTTC    G  A  ACCATTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3