SE2230189

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4912
  • Zea mays
  • SE2230189
  • hAT
  • Hat34
  • chr6:165206419-165206614
  • GAACCGAG
  • CGAGCAGGGACGGATCCAG

Secondary structure and sequence

TSD    TIR
5'



3' 
GAAC  --AG          T    -----C  T -  GCGGGCGGGGCTCGAGCCCCTCCTACCGCTTCAGATCCTATGGAGCCCCACTACAGCCTCCCCTA
    CG    CAGGGACGGA CCAG      GG G GG                                                                 
    ||    |||||||||| ||||      || | ||                                                                 A
    GC    GTCCCTGCCT GGTC      CA A TC                                                                 
  GA  CAAG          C    TTTTTT  - A  CTCCCTGACTTGCGTTAACGACGTCATATTTTTGAGTAAGATGTACTATAACATATGTAAAATCT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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