Plant MITE

SE2250191

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4914
Zea mays
SE2250191
PIF/harbinger
To8
chr4:83199082-83199331
TAA
AGACCATCTCCAGTAGTTTATCCATATTTATACCCATATTCAAACTAAACT

Secondary structure and sequence

TSD TIR

5'

3'

TA         C            C    T   A   A           A   ATACAAACAAC             C     A        -          A         T    A     T
  AGACCATCT CAGTAGTTTATC ATAT TAT CCC TATTCAAACTA ACT           ACAATCTACAGTG AAAAT GTGCAAAA GGTGTTTTTG TGACCATAT GGTG AGTGT 
  ||||||||| |||||||||||| |||| ||| ||| ||||||||||| |||           ||||||||||||| ||||| |||||||| |||||||||| ||||||||| |||| ||||| G
  TCTGGTAGA GTCGTCGAATAG TATG GTA GGG ATAAGTTTGAT TGA           TGTTAGATGTTAT TTTTA TACGTTTT CCACAAAAAT ACTGGTATA CTAC TTACA 
AA         A            A    T   C   C           G   GATATTTATCA             A     C        G          A         T    G     T

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250191

TAAGACCATCTCCAGTAGTTTATCCATATTTATACCCATATTCAAACTAAACTATACAAACAACACAATCTACAGTGCAAAATAGTGCAAAAGGTGTTTTTGATGACCATATTGGTGAAGTGTTGTACATTGCATCTATATGGTCAATAAAAACACCGTTTTGCATCATTTTATATTGTAGATTGTACTATTTATAGAGTGTAGTTTGAATACGGGCATGTGTATAGATAAGCTGCTGAAGATGGTCTAA

Copy Cancel