Plant MITE

SE2250200

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4923
Zea mays
SE2250200
PIF/harbinger
To72
chr6:121947056-121947254
TTG
GGGTGCTGTTTGGTTCA

Secondary structure and sequence

TSD TIR

5'

3'

TT                 -CGAAA          A      -        ------------------   TA A   --- ATTACGGGCGGTAACAAGTTTGAATAGTC
  GGGTGCTGTTTGGTTCA      TGTAACGTAA GGGTAA TGGTAATG                  GTT  C CTC   G                             
  |||||||||||||||||      |||||||||| |||||| ||||||||                  |||  | |||   |                             C
  TCCATGGCAAACCAAGT      ACATTGCATT CCCATT ACTATTGC                  TCA  G ATT   A                             
GT                 TTATAA          A      C        AATTTAGTACAAACAAAA   -- -   GGC TTAGTCTATGGTATGATTTTTAACTATGG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250200

TTGGGTGCTGTTTGGTTCACGAAATGTAACGTAAAGGGTAATGGTAATGGTTTACACTCGATTACGGGCGGTAACAAGTTTGAATAGTCCGGTATCAATTTTTAGTATGGTATCTGATTACGGTTAGACTAAAACAAACATGATTTAACGTTATCACTTACCCATTACGTTACAAATATTTGAACCAAACGGTACCTTG

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