SE2250204

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4927
  • Zea mays
  • SE2250204
  • PIF/harbinger
  • To38
  • chr6:112240587-112240717
  • TTA
  • AGGGCCTGTTCGGTTGTTCCGGATTGGAGCCCCGGATTAATTCCTAGCCGGATTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               GTT     TTG     CC     A     T   CGG    CTTC    ATT
  AGGGCCTGTTCGGTT   CCGGA   GAGCC  GGATT ATTCC AGC   ATTA    TCTA   
  |||||||||||||||   |||||   |||||  ||||| ||||| |||   ||||    ||||   T
  TCCCGGACAAGCCAA   GGCCT   CTCGG  CCTAA TAAGG TCG   TAGT    AGAT   
AT               -AT     -TA     -T     G     -   -AG    -TTT    ATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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