SE2250210

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4933
  • Zea mays
  • SE2250210
  • PIF/harbinger
  • To73
  • chr7:143175688-143176008
  • TTT
  • CTGTTTGTTTGGGCTTTTTCCAGCTTCTGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTTGCCC       T  G        -----      ----------      -----CACC    --   ----- CT  AGATCGCCAAACGCCTCAGCTTTTCAGTCAGCTTCTATAAGAATCGATTTGGTAAAAACCGTCCAAAATCAACATGAACACAAAATCAGTCGAA
       CTGTTTG TT GGCTTTTT     CCAGCT          TCTGGC         AAAA  GCT     G  GC                                                                                              
       ||||||| || ||||||||     ||||||          ||||||         ||||  |||     |  ||                                                                                               
       GACAAAC AA TCGAAAAA     GGTCGA          AGACCG         TTAG  CGA     T  TC                                                                                              
TTTCCCC       C  G        AGACT      AAAGACTTTT      ACACCTCTC    AC   CACCC --  TTAGACTCATAACACACCTAATACACGCCTCCTTATACTTCACCAGGTTTCCCAAGTCCTAGATCTTTGGTTGTCTAAGGATGATAGTACTGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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