SE2220211

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4934
  • Zea mays
  • SE2220211
  • Mutator
  • M17
  • chr7:27763189-27763413
  • ACATATTGG
  • ATATTGGGAAGAAAATTCTGTATATACCGGATGTAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
AC    TG             G                 CGCTA              C     CAATCACT      CCCACAAACAC   TCAAAATTTACAAAAAAAACCCTTTA
  ATAT  GGAAGAAAATTCT TATATACCGGATGTAAA     TTTTTTACAGCCTC CACAT        TGAAGG           AGA                          
  ||||  ||||||||||||| |||||||||||||||||     |||||||||||||| |||||        ||||||           |||                           
  TATA  CCTTTTTTTAAGA ATGTATGGCCTACATTT     AGAAAATGTCGGGG GTGTA        GACGAA           AGG                          
GT    CA             A                 TTTAG              A     -TAAAATC      ----------C   TATATTTATCTTCTTTTTGTTTAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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