SE2250220

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4943
  • Zea mays
  • SE2250220
  • PIF/harbinger
  • To75
  • chr7:106962123-106962318
  • TAA
  • AGGATGTGTTTGGTTTGAGGTTAAAGTACGATGAGGCG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   A           T  G  TA   -TAC   ----      G  G    CACCG   -  TCTATTTTTGGGGATCACGCCGTCACAAAAAATTACTCCG
  AGG TGTGTTTGGTT GA GT  AAG    GAT    GAGGCG GG GTGA     TCC CC                                        
  ||| ||||||||||| || ||  |||    |||    |||||| || ||||     ||| ||                                        G
  TCC ACACAAACTAA CT CA  TTC    CTA    CTCCGC CG GTGT     TAA GA                                        
AA   C           C  A  TG   CTCT   CCTT      -  -    -----   A  TATCACAAACCTACTCTCAGTACACACCCGTTCCATTTGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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