Plant MITE

SE2250221

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4944
Zea mays
SE2250221
PIF/harbinger
To28
chr5:149474384-149474618
TTA
AGGGCATGTACAACCCTGAGC

Secondary structure and sequence

TSD TIR

5'

3'

TT              - --C     CCTT     GGTTTTCC    ACAA   ACAA     AA    CATGATACAACCCTAAGTCCCCAGATCATAAATGCAGTCAAGACACAATATG
  AGGGCATGTACAAC C   TGAGC    GGATC        GAGT    GAG    CTAAG  ACTG                                                    
  |||||||||||||| |   |||||    |||||        ||||    |||    |||||  ||||                                                    T
  TCCCGTACATGTTG G   ATTTG    CCTAG        CTCA    TTC    GATTC  ACTT                                                    
AT              A TTA     --TT     AGAACTCC    AAAA   -CCC     --    TTTTAAGTTCTCTACCCGAGAAGTATTTCTCAGATAGAGATGTACTGTGATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250221

TTAGGGCATGTACAACCCTGAGCCCTTGGATCGGTTTTCCGAGTACAAGAGACAACTAAGAAACTGCATGATACAACCCTAAGTCCCCAGATCATAAATGCAGTCAAGACACAATATGTATAGTGTCATGTAGAGATAGACTCTTTATGAAGAGCCCATCTCTTGAATTTTTTCACTTAGCCCCTTAAAAACTCCCTCAAGAGATCCTTGTTTAATTGAGTTGTACATGCCCTTA

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