Plant MITE

SE2250227

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4950
Zea mays
SE2250227
PIF/harbinger
To76
chr3:195967008-195967357
TAA
AGAGCATCTCCAAGAGAGACTCTAAACATGGTCCTA

Secondary structure and sequence

TSD TIR

5'

3'

TA             -  G          -CAT       -------------      --- T     --------   CAAAACCATAAAACATCCTTCCAACAGCGGCCCTATTTTATAAAATTTCATCAAATGGTTATAGGGCTCGGTCTCTCGGGTCCTAAATATAGTACCCATATACTGAAG
  AGAGCATCTCCAA GA AGACTCTAAA    GGTCCTA             TTTTAA   A ATAGG        GCT                                                                                                            
  ||||||||||||| || ||||||||||    |||||||             ||||||   | |||||        |||                                                                                                            C
  TCTCGTAGAGGTT TT TTTGAGATTT    TCAGGAT             CTGGTA   A TCTTA        AGA                                                                                                            
AA             G  G          TATC       TTTAAACTTTATC      TAA -     CAAATCCC   GTTTTCTTTACAAATGAGATTATCAGTCCGGAATGTATTACGATAAATCCTTTATTTAGTACTATAATCCTTTATTTACCAACCTCTAATTCACCTTTACTTCTATCC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250227

TAAGAGCATCTCCAAGAGAGACTCTAAACATGGTCCTATTTTAAATATAGGGCTCAAAACCATAAAACATCCTTCCAACAGCGGCCCTATTTTATAAAATTTCATCAAATGGTTATAGGGCTCGGTCTCTCGGGTCCTAAATATAGTACCCATATACTGAAGCCCTATCTTCATTTCCACTTAATCTCCAACCATTTATTTCCTAATATCATGATTTATTTCCTAAATAGCATTATGTAAGGCCTGACTATTAGAGTAAACATTTCTTTTGAGACCCTAAACATTCTAAATATGGTCCTATTTCAAATTTTAGGACTCTATTTTAGAGTTTGTTGTTGGAGATGCTCTAA

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