Plant MITE

SE2230228

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4951
Zea mays
SE2230228
hAT
Hat39
chr5:201110566-201110854
CGAGTGCG
GCGCCCAACTTTTTTGCATTTTAGCCCTTTTAGGATTTCTTTTGCACAATTATACCCTTTGTAGTTTCATTTCAAAAAATGGACCCTTACCTCGGCGCCGTCATCATTGGCGCCGAGGTAACACATAGTGGCGCCA

Secondary structure and sequence

TSD TIR

5'

3'

CGAGT    ----            C         C    A  A   C              A                  C              T                                       G        ATG
     GCGC    CCAACTTTTTTG ATTTTAGCC TTTT GG TTT TTTTGCACAATTAT CCCTTTGTAGTTTCATTT AAAAAATGGACCCT ACCTCGGCGCCGTCATCATTGGCGCCGAGGTAACACATA TGGCGCCA   
     ||||    |||||||||||| ||||||||| |||| || ||| |||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||   G
     CGTG    GGTTGAAAAAAC TAAAATCGG AAAA CT AAA AAAACGTGTTGATA GGGAAATGTCAAAGTAAA TTTTTTACCTGGGG TGGAGCCGCGGTAGTAGTAACCGCGGCTCCATTGTGTGT GCTGCGGT   
    G    AGCT            T         A    A  C   A              C                  A              T                                       A        CAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2230228

CGAGTGCGCCCAACTTTTTTGCATTTTAGCCCTTTTAGGATTTCTTTTGCACAATTATACCCTTTGTAGTTTCATTTCAAAAAATGGACCCTTACCTCGGCGCCGTCATCATTGGCGCCGAGGTAACACATAGTGGCGCCAATGGAACTGGCGTCGATGTGTGTTACCTCGGCGCCAATGATGATGGCGCCGAGGTTGGGGTCCATTTTTTAAAATGAAACTGTAAAGGGCATAGTTGTGCAAAAAAAACTCAAAAAAGGCTAAAATTCAAAAAAGTTGGTCGAGTGCG

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