SE2230230

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4953
  • Zea mays
  • SE2230230
  • hAT
  • Hat30
  • chr7:167035661-167035851
  • GTTGCAAC
  • GTTGCAACCTTAGTAACC

Secondary structure and sequence

TSD    TIR
5'



3' 
                  AG     CG    GATGGGATCGAGGAACGGGAACGTGGTACGCGGAACGCTACAAAAACTAGGATTTAACACTACTG
GTTGCAACCTTAGTAACC  GTTCC  GATC                                                                 
||||||||||||||||||  |||||  ||||                                                                  
CAACGTTGGAATCATTGG  CCTTG  CCTT                                                                 
                  -C     AC    GAACCGGTGCAAGGAGCAAGGCCCTTGCAAGCAAGGCAAGGCCCTTGCACCCTTGTTAGAACAAG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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