SE2210240

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4963
  • Zea mays
  • SE2210240
  • Tc1/Mariner
  • St14
  • chr6:516734-517014
  • TA
  • CTCCATTTCAAATTACAGTTTACTTTAGCTTTGCCCTATAAGTCAAACTCAGCTTTGATCAAGTTTTTAGAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TACACC       ----        C                 C    ----           - ---          A     T        AACA      CAC      GT        -----    AC      --CTA      CAT
      CTCCATT    TCAAATTA AGTTTACTTTAGCTTTG CCTA    TAAGTCAAACT C   AGCTTTGATC AGTTT TAGAAAAA    TATTGA   CTGCAA  TCGAATAA     ATGT  TATCAA     TCATGA   
      |||||||    |||||||| ||||||||||||||||| ||||    ||||||||||| |   |||||||||| ||||| ||||||||    ||||||   ||||||  ||||||||     ||||  ||||||     ||||||    
      GAGGTAG    GGTTTAAT TCAAGTGAGATCGAAAC GGAT    ATTCAGTTTGA G   TTGAAACTGG TCAAA ATCTTTTT    ATAGTT   GGTGTT  AGTTTGTT     TACA  ATAGTT     GGTACT   
    AT       ACAA        A                 A    TAGG           T GGA          C     T        --AC      TTA      AT        GAATA    AT      TAAAA      TTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3