SE2250242

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4965
  • Zea mays
  • SE2250242
  • PIF/harbinger
  • To18
  • chr6:14401491-14401887
  • TAA
  • AGGGTGTGTTTGGTTGAGGAGTGGAAGAGAATGGAGCGGCTCCATTCCTATTTTCTGGA

Secondary structure and sequence

TSD    TIR
5'



3'
TA                A     G  AG                    CTA    CT   ---    - -    TCC    AA  -  GAGCGGAGCGGCTCCTGGAGTCTCCATATAGAAATTTACCATAAATAGTTGGAATGCTCCCGCTCCTCCAAAACAACCAGATGTGAGCGCTCTCCCGGACGCGAGCACTCTCCTC
  AGGGTGTGTTTGGTTG GGAGT GA  AGAATGGAGCGGCTCCATTC   TTTT  GGA   TGTT T GGTT   AACA  AG AG                                                                                                                   
  |||||||||||||||| ||||| ||  ||||||||||||||||||||   ||||  |||   |||| | ||||   ||||  || ||                                                                                                                    
  TCCCACGCAAACCAAC TCTCA TT  TCTTACCTCGCCGAGGTAAG   AAAA  TCT   CTCG C AGAT   AAGA  CG AA                                                                                                                   
AA                C     G  GA                    ATC    AC   TAC    G A    ---    --  C  ACGGTTCGTTTTGTCTCGGCGAGATAAAAAACAAACCAACTTGTCATCTTATCTCGCCTCGGCGAGGCAAGAAACAAACCAATCTCTCGGTATACTCATATCTCCCCTTCTCTCC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End