SE2220243

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4966
  • Zea mays
  • SE2220243
  • Mutator
  • M7
  • chr5:66108588-66108801
  • GTGCCAAGG
  • GTGCCAAGGGAAAAAAATTTGGTGCAGCACTGCTGCAAACCAGAGTGTTTGCAGCCCCTCACAAAAAAGAGGATAGACCCCACCCGCAGCAACA

Secondary structure and sequence

TSD    TIR
5'



3' 
    T  CA G                                       -                    A                C    CAA  ATAATAC   TAA
   G GC  A GGAAAAAAATTTGGTGCAGCACTGCTGCAAACCAGAGTG TTTGCAGCCCCTCACAAAAA GAGGATAGACCCCACC GCAG   CA       AAC   
   | ||  | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||   ||       |||    
   C CG  T CCTTTTTTTAAACCACGTCGTGACGACGTTTGGTCTCAC AAACGTCGGGGAGTGTTTTT CTCCTATCTGGGGTGG CGTC   GT       TTG   
GAA -  -- G                                       C                    C                A    CAG  -CGTCTA   CAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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