Plant MITE

SE2210245

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4968
Zea mays
SE2210245
Tc1/Mariner
St15
chr7:166127106-166127338
TA
TACTCCCTCCGTCCCGATTTATAATTCGTTTGACCTTTTCAATCTCAAGTTTGACCAATCGTCCTATTAAAAAAATTGTGAAAAACGAAAAA

Secondary structure and sequence

TSD TIR

5'

3'

         C  C    TT               C    C                 A     C    A      T         C      TTTC      -  TTT  T    AT
TACTCCCTC GT CCGA  TATAATTCGTTTGAC TTTT AATCTCAAGTTTGACCA TCGTC TATT AAAAAA TGTGAAAAA GAAAAA    GTTGTG GT   GT TATT  
||||||||| || ||||  ||||||||||||||| |||| ||||||||||||||||| ||||| |||| |||||| ||||||||| ||||||    |||||| ||   || ||||   
ATGAGGGAG CA GGTT  ATATTAAGCAAACTG AAAA TTGGAGTTCAAACTGGT AGCAG ATAG TTTTTT ATATTTTTT CTTTTT    CGGTAT CA   CA ATAA  
         A  A    TT               A    A                 G     A    G      T         A      TTTT      A  TTT  T    AC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2210245

TACTCCCTCCGTCCCGATTTATAATTCGTTTGACCTTTTCAATCTCAAGTTTGACCAATCGTCCTATTAAAAAAATTGTGAAAAACGAAAAATTTCGTTGTGGTTTTGTTTATTATCAAATATACTTTACATATGGCTTTTTTTTTCATTTTTTATATTTTTTTGGATAAGACGAGTGGTCAAACTTGAGGTTAAAAAAGTCAAACGAATTATATTTTGGAACAGAGGGAGTA

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