SE2250250

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4973
  • Zea mays
  • SE2250250
  • PIF/harbinger
  • To78
  • chr5:130121698-130121895
  • TAA
  • AGGCCCTGTTTGGAACCCCTAGAGCTAATAGTTAGC

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                 C                  CAGCTAATAAA      -     GTTGAGCCAGCTAATGAACTAAATGTTAGTTGTGAGGTAGCTA
  AGGCCCTGTTTGGAACC CTAGAGCTAATAGTTAGC           TTATTA GCTGG                                           
  ||||||||||||||||| ||||||||||||||||||           |||||| |||||                                           A
  TCCGGGACAAACCTTGG GATTTTGATTATCAATCG           TGATTT TAATC                                           
AA                 A                  ----------A      T     AACAACCCAAGGTTTGTCGGAGTCGATTATGGCGTCGATTAAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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