Plant MITE

SE2250255

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_4978
Zea mays
SE2250255
PIF/harbinger
To12
chr5:159538906-159539095
TTA
AGGGGGTGTTTAAATGCACTAGAGCTAATAGTTAGTTGACTAAAA

Secondary structure and sequence

TSD TIR

5'

3'

TT           A                        T        AATT     TG      GCTAGGTAACTATTAACTAATTTACTAAAAATA
  AGGGGGTGTTT AATGCACTAGAGCTAATAGTTAGT GACTAAAA    GTTAG  GAATTA                                 
  ||||||||||| |||||||||||||||||||||||| ||||||||    |||||  ||||||                                  
  TCCCCCACAAA TTACGTGATCTCGATTATCAATCG CTGATTTT    CAATC  TCTGTA                                 
AT           C                        -        -AAT     --      AGTTTGTAGGATCGATTATCAAATCGATAATCG

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250255

TTAGGGGGTGTTTAAATGCACTAGAGCTAATAGTTAGTTGACTAAAAAATTGTTAGTGGAATTAGCTAGGTAACTATTAACTAATTTACTAAAAATAGCTAATAGCTAAACTATTAGCTAGGATGTTTGAATGTCTCTAACTAATTTTAGTCGCTAACTATTAGCTCTAGTGCATTCAAACACCCCCTTA

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