SE2250263

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4986
  • Zea mays
  • SE2250263
  • PIF/harbinger
  • To36
  • chr7:41736683-41736827
  • TAA
  • AGGCTTTGTTTGGGTACTCTAGTATTGGTCCCAATCCACATGTGTTGAGGTGGATTGGGGTGTAAATTAGTTTAAGTTACACCCCAATCCACCTCAATACAAGTGGATTGAGGTCAATACTAGAGTACCCAAACTAGACCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   -  TT                     T  -        A                         A   G
  AGG CT  GTTTGGGTACTCTAGTATTGG CC CAATCCAC TGTGTTGAGGTGGATTGGGGTGTAA TTA 
  ||| ||  ||||||||||||||||||||| || |||||||| ||||||||||||||||||||||||| ||| T
  TCC GA  CAAACCCATGAGATCATAACT GG GTTAGGTG ACATAACTCCACCTAACCCCACATT AAT 
AA   A  -T                     -  A        A                         G   T
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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