SE2240268

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4991
  • Zea mays
  • SE2240268
  • CACTA
  • Ca4
  • chr6:237861-238036
  • CGC
  • GCCACTACAAGAAACTTGTTAATCTATGACGCTCAATCCGTGACGATACCTTGAAAATTGTCACAGATAACC

Secondary structure and sequence

TSD    TIR
5'



3'
C  -                                                 T A         C        ATTGAAAAC         GA
 GC CACTACAAGAAACTTGTTAATCTATGACGCTCAATCCGTGACGATACCT G AAATTGTCA AGATAACC         GTCACAGAT  
 || ||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||         |||||||||   
 CG GTGATGTTCTTTGAACAATTAGATACTGCGAGTTAGGCACTGCTATGGA C TTTAGCAGT TCTATTGG         CAGTGTCTA  
   C                                                 - G         A        ---------         CG

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End