SE2250272

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4995
  • Zea mays
  • SE2250272
  • PIF/harbinger
  • To85
  • chr6:147214362-147214579
  • TTA
  • TAGGGTGTGTTTGGATGGAGGGACGAGG

Secondary structure and sequence

TSD    TIR
5'



3' 
T      -        -A   -AGG       AAGGACGAA         GATGAG    - TTTAATTTGACTCGTGTTTGGTTTGGAGATCCAGAGTCAGGGTCAAGGAATATTC
 TAGGGT GTGTTTGG  TGG    GACGAGG         GAGGGATGG      ATCA T                                                       
 |||||| ||||||||  |||    |||||||         |||||||||      |||| |                                                       T
 ATTCCA CACAAACC  GCC    TTGCTCC         CCCTGCCCT      AGTT G                                                       
       T        AA   ACAG       ------CTA         ------    A GACCCGACTGGGGCAGGGAATAAAAAACTCCCTACTGAAGTAGGTGGTAAAAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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