SE2220274

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4997
  • Zea mays
  • SE2220274
  • Mutator
  • M23
  • chr5:34398318-34398697
  • TACATCCTT
  • GGAAACATATCTGGTGCACATAAGCTTTTGATACACATATGGTGCACAAGAATTATCAAAGTTCA

Secondary structure and sequence

TSD    TIR
5'



3'
TACATCCTT           T         A        ATA               A      T         AAAAAA     A                             A        C    C     T  C     G       T      G           T  A    ---    CAA     A
         GGAAACATATC GGTGCACAT AGCTTTTG   CACATATGGTGCACA GAATTA CAAAGTTCA      TGAAA ATTCATACATATTTTTTCCATCCTACTCC ATTATATA AAAA TTCAA TT AAATT ATTATAT TTAGTT TAATAAAAAAG AA ATTT   CTAA   GTTTA 
         ||||||||||| ||||||||| ||||||||   ||||||||||||||| |||||| |||||||||      ||||| ||||||||||||||||||||||||||||| |||||||| |||| ||||| || ||||| ||||||| |||||| ||||||||||| || ||||   ||||   ||||| A
         CCTTTGTATAG CCACGTGTA TTGGAAAC   GTGTATATCACGTGT CTTGAT GTTTCAAGT      GTTTT TAAGTATGTATAAGAAAGGTAGGATGAGG TAATATAT TTTT AAGTT AA TTTAA TAATATA AATCGA ATTATTTTTTC TT TAAA   GATT   TAGAT 
CTCCTACAT           T         C        CAC               A      T         ------     C                             A        A    A     T  T     G       C      A           -  A    ATC    -AA     T

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End