SE2250275

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_4998
  • Zea mays
  • SE2250275
  • PIF/harbinger
  • To46
  • chr5:16432667-16432802
  • TCA
  • AGGGCTAGTTTGGGAGTCCAAATACCGGAGGAGATTGGAGGGGCTAAAATCCCCTTCATATTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TC                  -    T        A                         A      AT
  AGGGCTAGTTTGGGAGTC CAAA ACCGGAGG GATTGGAGGGGCTAAAATCCCCTTC TATTCA  
  |||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||| ||||||   
  TCCCGATCAAACCCTCGG GTTT TGGCCTCC CTAACCTCCCCGATTTTAGGGGAGG ATAAGT  
AC                  T    -        C                         A      TT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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