SE2230277

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5000
  • Zea mays
  • SE2230277
  • hAT
  • Hat44
  • chr6:78621087-78621317
  • CCAATACA
  • CAGTGGCGGAGACA

Secondary structure and sequence

TSD    TIR
5'



3' 
CCAATACA           A     GTGGGCCCTACTCTTAAGCCGAAAAATTGCTAGGGACCTAAATATGTTCTTAAAGAATGAGAGAATTCGTATAATTCGTTCATGGTCATA
        CAGTGGCGGAG CAGGT                                                                                          
        ||||||||||| |||||                                                                                          T
        GTCACCGCCTC GTTCT                                                                                          
ACATAACC           G     AAAGAGATTCACATCTCGGGCTATATTGTAATTGTTTATAAATATAGTCGATCTTTTAGAATTTAGTACGTTTACGTATCTATTACCGTG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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