Plant MITE

SE2250279

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5002
Zea mays
SE2250279
PIF/harbinger
To36
chr6:82877684-82877828
TCA
GCTTTGTCTGGGTACTCTAGTATTCATCCCAATCCACATGTATTGAAGTGGATTGTGGTGTATGTTAAACTAATTTACACCCCAATTCACCTCAATACATGTGGATTGGGATGAATACTAAAGTACCCAAATAAAGC

Secondary structure and sequence

TSD TIR

5'

3'

TCAT       C        C                             A        T      T    A
    GCTTTGT TGGGTACT TAGTATTCATCCCAATCCACATGTATTGA GTGGATTG GGTGTA GTTA 
    ||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |||| A
    CGAAATA ACCCATGA ATCATAAGTAGGGTTAGGTGTACATAACT CACTTAAC CCACAT TAAT 
ACTC       A        A                             C        C      T    C

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

SE2250279

Basic info.

Secondary structure and sequence

MITE cluster

Closed gene

>SE2250279