SE2250283

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5006
  • Zea mays
  • SE2250283
  • PIF/harbinger
  • To86
  • chr6:165087556-165087911
  • TAA
  • AGACTGACTCCAACAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA                   -   TGCAAAT   --  A  -   TCAA  CTT  -  TA   TCTCTAGTTTGCCTGTCCAGCCATATGACACACGCTTTCAACAGCACAGGTAAAAAGGCAGCGGTAGTATAGTCCAACAAATGGAGCAGATGGTGGGGTCATGTTCTCAGACACAGGAAAAAG
  AGACTGACTCCAACAGAGG CCA       CGA  GC GT CAT    GC   TG GC  GCA                                                                                                                           
  ||||||||||||||||||| |||       |||  || || |||    ||   || ||  |||                                                                                                                            
  TCTGACTGAGGTTGTCTCG CGA       TTT  CT GT CGT    CG   AT TT  ATC                                                                                                                           
AA                   T   -------   AC  -  C   --TT  ---  T  --   GACGAGTGCTCGATGACATCGTCATGTTTTACAGAAGGTTGTCCCGCCGGTTTGCTCGGTCCGTTTTTTCTACCTTTCTCTCTCCTTTCGGTATTATCGAACATCACATCGACCGTCGGTAAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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