SE2250284

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5007
  • Zea mays
  • SE2250284
  • PIF/harbinger
  • To35
  • chr7:170956064-170956197
  • TTA
  • AGACCTTGTTCGGTTGCATGTGGATCGGAAGGGGTTGAGGGGGATTAAATCCCCTTCTATTC

Secondary structure and sequence

TSD    TIR
5'



3' 
TT  AC            CA G         A       A               C     T  TAT
  AG  CTTGTTCGGTTG  T TGGATCGGA GGGGTTG GGGGGATTAAATCCC TTCTA TC   
  ||  ||||||||||||  | ||||||||| ||||||| ||||||||||||||| ||||| ||    
  TC  GAACAAGCCAAC  A ACCTAGCTT CCCTAAC TCCCCTAATTTAGGG GGGAT AG   
AT  CC            AC G         C       C               A     C  TTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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