SE2230286

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_5009
  • Zea mays
  • SE2230286
  • hAT
  • Hat45
  • chr5:76382949-76383143
  • TTGGGGAT
  • CAGGGGCGGACTCA

Secondary structure and sequence

TSD    TIR
5'



3' 
TTGGGGAT   G          CCA    ------      -- CAGGCGGTGGCCTGGGCTGGCTCGCCAGCTGCAATGGAGGGCAAGGCGCGAGCACAGTG
        CAG GGCGGACTCA   CCCA      GGCACC  G                                                           
        ||| ||||||||||   ||||      ||||||  |                                                            
        GTC CCGCCTGGGT   CCTT      TGTCGG  C                                                           
TAGGGGTT   A          ---    GACTAC      AT CGCTCTTATGCCACACTAGGGGTGCGGACACGAGCACGGTGCACGACGAACGAAGGCAC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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