Plant MITE

SE2250287

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_5010
Zea mays
SE2250287
PIF/harbinger
To87
chr5:148140479-148140765
TAA
AGGGCATGTACAACC

Secondary structure and sequence

TSD TIR

5'

3'

TA               CACATAAA   -  -- GTA      GGGGTATTAAGGAGGTAAGTGTAAAAAAATATAGCAAACGGTATCTTGATGAAGGAACGTCTCTAGCATGGTTCTCTAAGTCTAGATATGGTTCTACTCATACA
  AGGGCATGTACAACC        TGC AC  T   TCTTAA                                                                                                        
  |||||||||||||||        ||| ||  |   ||||||                                                                                                        A
  TCCCGTACATGTTGG        GAT CG  A   CCAAGA                                                                                                        
AA               --ATCTAT   G  CC ---      AGTTCGTGATCTATGTGAATTCTTTGGGAAAGTATGTTGGGTTACATAAATTCAGAACATATAATAAGTGATCTTGGAGAGTTCTATGCTGAGTAAATACAACC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE2250287

TAAGGGCATGTACAACCCACATAAATGCACTGTATCTTAAGGGGTATTAAGGAGGTAAGTGTAAAAAAATATAGCAAACGGTATCTTGATGAAGGAACGTCTCTAGCATGGTTCTCTAAGTCTAGATATGGTTCTACTCATACAACCAACATAAATGAGTCGTATCTTGAGAGGTTCTAGTGAATAATATACAAGACTTAAATACATTGGGTTGTATGAAAGGGTTTCTTAAGTGTATCTAGTGCTTGAAGAACCACCGCGTAGTATCTAGGTTGTACATGCCCTAA

Copy Cancel